PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075911.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 579aa MW: 66710.4 Da PI: 9.3935

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.6	2.4e-19	82	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY YA+ +GF vrk ++k ++g + r + C+keg+r e++ + ++ r+++a+tr++C+a+lkv++++ ++k++v ++++ H H l+ XP_027075911.1 82 FYMIYARATGFGVRKGCKRKD-KKGDVRVRSWLCNKEGERLEKHLNrGNRIREPKAVTRVNCQAHLKVRLHEsKQKYVVVQFVSGHCHRLC 171 9*************99998.55669*********9999885678899**************99***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MVEGHPWSRR DVGASAEGEE SDNRLKIVHS TTNCRTERIL GQGAVGDIVG QDGPNVNAAF 60 HCIDDIEVGS MEFDSIEEAE AFYMIYARAT GFGVRKGCKR KDKKGDVRVR SWLCNKEGER 120 LEKHLNRGNR IREPKAVTRV NCQAHLKVRL HESKQKYVVV QFVSGHCHRL CSPESVSFMR 180 SHRKVGKSDL QQAVLMQQAG IRTSHIMRLL AVQAGGYRNL GFHETDMYNA LNRQRQVAVG 240 DGDSDSALAF LLGKQRSDPN LFFKYSVDGH GRLNRLLWAD SVCRDDYRCF GDVLVFDSTY 300 NTNQYRFPLV VLCEVNNHYS TCIFACAFIV REGDEGYDWV ISTFLEAMHG RKPIAVVTDG 360 DKSMRKCIKK LMPTAKHRLC SFHLEMNAAT NVRDKEFLQA FKTCMFMNCT TINFETRWAA 420 VVRRFRLENN EWVKKMYRKR ELWAMAFLRG NFFGGVRSTQ RCEKMHQVLK LHLTPKLKLF 480 ECLETYDLAV GRLRHEERRQ RAVTEHTTLL GATQLQALEK HAAEVFTRST FVVVREEMKK 540 QGLFCRINGT DDGINAVHFM KHPYNYSYYT VVYNRSRDI

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MVEGHPWSRR DVGASAEGEE SDNRLKIVHS TTNCRTERIL GQGAVGDIVG QDGPNVNAAF  60
HCIDDIEVGS MEFDSIEEAE AFYMIYARAT GFGVRKGCKR KDKKGDVRVR SWLCNKEGER  120
LEKHLNRGNR IREPKAVTRV NCQAHLKVRL HESKQKYVVV QFVSGHCHRL CSPESVSFMR  180
SHRKVGKSDL QQAVLMQQAG IRTSHIMRLL AVQAGGYRNL GFHETDMYNA LNRQRQVAVG  240
DGDSDSALAF LLGKQRSDPN LFFKYSVDGH GRLNRLLWAD SVCRDDYRCF GDVLVFDSTY  300
NTNQYRFPLV VLCEVNNHYS TCIFACAFIV REGDEGYDWV ISTFLEAMHG RKPIAVVTDG  360
DKSMRKCIKK LMPTAKHRLC SFHLEMNAAT NVRDKEFLQA FKTCMFMNCT TINFETRWAA  420
VVRRFRLENN EWVKKMYRKR ELWAMAFLRG NFFGGVRSTQ RCEKMHQVLK LHLTPKLKLF  480
ECLETYDLAV GRLRHEERRQ RAVTEHTTLL GATQLQALEK HAAEVFTRST FVVVREEMKK  540
QGLFCRINGT DDGINAVHFM KHPYNYSYYT VVYNRSRDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-74	FAR1 family protein