PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075663.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 691aa    MW: 78106.1 Da    PI: 6.1633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-192681156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r++ +++++eq+++Lee+F+ +++p++++r++L+++lgL+ rq+k+WFqN+R++ k
  XP_027075663.1 26 RKQYHRHSAEQIQRLEEFFKDCPHPDENQRRQLSRELGLEPRQIKFWFQNKRTQTK 81
                    788999**********************************************9988 PP
2START122.36.4e-392094283206
                     HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     a  a++el+ +   +ep+Wvks+         e++d+ + k++        + +e +r+sg+v+ ++   + ++++d+e+W   ++    k+ t+
  XP_027075663.1 209 AVNAMDELLELFRGNEPLWVKSPtneryliHRETYDKLYPKISH--InsssSWIESSRDSGLVPITAR-HLIDIFQDPEKWMDFFPtivtKVRTI 300
                     6789*******************777666666666666666644..1568899*************99.8889999999***99999999***** PP

                     EEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  83 evissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ev+++g   g l +m  +l +lsplv+ R+  f+Ry rql   +wviv vS ds ++ + ++s+    ++pSg+li++++ng+ +v wvehv ++
  XP_027075663.1 301 EVLDTGkrgGSLFVMHEKLHVLSPLVApRELAFLRYVRQLDSTTWVIVNVSYDSLKELE-DASSSQTWMFPSGCLIQDMPNGKANVAWVEHVQVD 394
                     **************************99******************************9.9********************************** PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +r+  h l++ +v  ++a gak+w  tlqr ce+
  XP_027075663.1 395 DRSLtHPLYKDMVCDSQAYGAKRWIVTLQRMCER 428
                     **999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    
MDFAPEGSGS ADEHDDSSNS RRERERKQYH RHSAEQIQRL EEFFKDCPHP DENQRRQLSR  60
ELGLEPRQIK FWFQNKRTQT KSHNERADND ALRVENDRFY YENLVMREAL RNLVCPKCED  120
ASSGEEARQR NLERLRAENA WLKQELERAS RVVSTFSRRS GVLESYLPPS FSPLSYLGEN  180
IPGTSTTTLL PQRLSEIQEM EKSVMVETAV NAMDELLELF RGNEPLWVKS PTNERYLIHR  240
ETYDKLYPKI SHINSSSSWI ESSRDSGLVP ITARHLIDIF QDPEKWMDFF PTIVTKVRTI  300
EVLDTGKRGG SLFVMHEKLH VLSPLVAPRE LAFLRYVRQL DSTTWVIVNV SYDSLKELED  360
ASSSQTWMFP SGCLIQDMPN GKANVAWVEH VQVDDRSLTH PLYKDMVCDS QAYGAKRWIV  420
TLQRMCERFA FSLGPIPTPG HELEGVIDAP EGRKSLAKLS HKMVKNFCHI LSMPERIDLP  480
QLSELNRNGF RVSVHRSDTS GQPNNMIVCV AASLRLPTSF ENLFDFFKDE HARDQWDVLS  540
EGNPVHEIAH ISTGTHPGNS ISLMQPVNPK ENMLILQESS IDLLGANLIY VPVPVSTITS  600
AISGQDTTDT NVLPSGFIIS SDGVDGGTRA GASSSSSMIG SNSSLLTVAF QIMVRPDTFS  660
DRLITDSVAT IHALISSTVQ KIRLAVGSRF G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128RRERERKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein