PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075651.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 272aa    MW: 30869.7 Da    PI: 4.5592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-11107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT+eE++ ++ + k++G g+Wk I+++  ++R + q+ s+ qky
   XP_027075651.1 107 RWTEEEHLMFLVGLKRFGRGDWKNISKHCVTTRKPSQVASHGQKY 151
                      8****************************************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MEWSPEDDKL LENALAELDS SSPNSCEDGA DKIPWKSVDE SEELYQDHQA LARDTNLTEA  60
DNYYPMPLHT NDHGVENPGA LKSGEETGSS SRKKQATKND QRQKTIRWTE EEHLMFLVGL  120
KRFGRGDWKN ISKHCVTTRK PSQVASHGQK YFRRQKSSTP EDKRRSSIND IIAIDPDFVV  180
PHYTFPSLEQ ETPSYSTSTG QPEIALPSEP DRSYDVEELL NSTEASTFQL EEFPPVDEAF  240
FEDPSFYFLP PDAAYPGARI NKENHGQGPK NQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-33MYB family protein