PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075443.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 539aa MW: 60252.8 Da PI: 5.2352

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.7	9.9e-26	54	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r +m+ ++r++ k+plW+ev +k+ e g++rs+ +Ckek+en+ k++k++k+ +++r ++ +++++f+qle XP_027075443.1 54 RWPREETLALLKIRADMDLAFRDSTVKAPLWDEVTRKLGELGYHRSARKCKEKFENIFKYHKRTKDCRSGR--QNGKNYRFFEQLE 137 8******************************************************************98..45567*****8 PP
2	trihelix	99.1	3.7e-31	368	452	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aL+++r++++ +++++ lk+plWee+s++m++ g+ rs+k+Ckekwen+nk+yk+++e+ k+r +ess+tcpyf+ le XP_027075443.1 368 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEISSAMKKLGYDRSAKRCKEKWENINKYYKRVRESHKRR-PESSKTCPYFHLLE 452 8******************************************************************97.9********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MLDNSGGGGG GGSGAAPLEA AAEVMVGAEN GGGGGGGGGG GEEEERGKGE GGNRWPREET 60 LALLKIRADM DLAFRDSTVK APLWDEVTRK LGELGYHRSA RKCKEKFENI FKYHKRTKDC 120 RSGRQNGKNY RFFEQLERFD NQPSLPSPPL SQIQTHVAET TQTTTIAAPT IIKVTSGSLD 180 SMVPHPSENP NMEFVTPSTS TTSSSGRESE GSVKKKRKLS DYFEKLMKEI LEKQENLQNQ 240 LLAALEKCER DRIAREEAWR LQQMDRIRKE QEYLANERAI SAARDATVMA FLQKISEQAI 300 PGQFAEAATP ISEKHPDKQQ VQTPGPFTPG TIENQELGTS IGRQEDAFDV DKRGNGFGES 360 SIQATTSRWP KAEVEALVRL RTNLGMQFQD NGLKGPLWEE ISSAMKKLGY DRSAKRCKEK 420 WENINKYYKR VRESHKRRPE SSKTCPYFHL LESIYEKKSK GVEQNAEWSG NNLEPEHILM 480 QMMGQQEQQP QHQQLTEDGG SENADENRED DAMEEEEEND NGDGYELVAN HPSSVASME

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MLDNSGGGGG GGSGAAPLEA AAEVMVGAEN GGGGGGGGGG GEEEERGKGE GGNRWPREET  60
LALLKIRADM DLAFRDSTVK APLWDEVTRK LGELGYHRSA RKCKEKFENI FKYHKRTKDC  120
RSGRQNGKNY RFFEQLERFD NQPSLPSPPL SQIQTHVAET TQTTTIAAPT IIKVTSGSLD  180
SMVPHPSENP NMEFVTPSTS TTSSSGRESE GSVKKKRKLS DYFEKLMKEI LEKQENLQNQ  240
LLAALEKCER DRIAREEAWR LQQMDRIRKE QEYLANERAI SAARDATVMA FLQKISEQAI  300
PGQFAEAATP ISEKHPDKQQ VQTPGPFTPG TIENQELGTS IGRQEDAFDV DKRGNGFGES  360
SIQATTSRWP KAEVEALVRL RTNLGMQFQD NGLKGPLWEE ISSAMKKLGY DRSAKRCKEK  420
WENINKYYKR VRESHKRRPE SSKTCPYFHL LESIYEKKSK GVEQNAEWSG NNLEPEHILM  480
QMMGQQEQQP QHQQLTEDGG SENADENRED DAMEEEEEND NGDGYELVAN HPSSVASME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-60	Trihelix family protein