PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075224.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 391aa MW: 44390 Da PI: 9.8261

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.8e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G + W++I+++mg + R +k+c +rw +yl XP_027075224.1 4 RQRWQPEEDALLRAYVKQYGAKEWNLISQRMGknLDRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.3	2.7e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_027075224.1 59 KGSLTPEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MKERQRWQPE EDALLRAYVK QYGAKEWNLI SQRMGKNLDR DPKSCLERWK NYLKPGIKKG 60 SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQHRQEY 120 TDPVAVSAVS GRASPEKAVQ AGKYDHILET FAEKYVQPKL FAFQSLPLPP AIMPNLSLPE 180 PPPVLSLGSV AITEPMNGSA ATIPSSTLPP WMNTMNITPT TTSSLTSSSS TPSPSVSLTL 240 SPSEPAVLDP VQPEMGLPSR FFPVQQMGAL IQCCKELEEG RQNWVQHKKE ATWRLNRLEQ 300 QLDSEKARKR REKMEEIEAK IRCLREEEMA FLGRLESEYR DQLSSLQRDA EAKEAKLMEA 360 WCSKHAKLAK LVEQIGVHSH GFTTTLAKDL R

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MKERQRWQPE EDALLRAYVK QYGAKEWNLI SQRMGKNLDR DPKSCLERWK NYLKPGIKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQHRQEY  120
TDPVAVSAVS GRASPEKAVQ AGKYDHILET FAEKYVQPKL FAFQSLPLPP AIMPNLSLPE  180
PPPVLSLGSV AITEPMNGSA ATIPSSTLPP WMNTMNITPT TTSSLTSSSS TPSPSVSLTL  240
SPSEPAVLDP VQPEMGLPSR FFPVQQMGAL IQCCKELEEG RQNWVQHKKE ATWRLNRLEQ  300
QLDSEKARKR REKMEEIEAK IRCLREEEMA FLGRLESEYR DQLSSLQRDA EAKEAKLMEA  360
WCSKHAKLAK LVEQIGVHSH GFTTTLAKDL R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	7e-59	MYB family protein