PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075128.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 517aa    MW: 59456 Da    PI: 8.8487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-1425991598
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDfvvF+++g++ f   v vf+
  XP_027075128.1 25 GVKIPASFL-NYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFVVFEHEGNMVF--EVLVFD 99
                    5789*****.6655553.445799999999*******....443..5*************************99999..777776 PP
2B354.42.3e-171612371089
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ e
  XP_027075128.1 161 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTENGE 237
                     455689***********554.33458***************..8888889************************987533 PP
3B350.44e-163133881796
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ +
  XP_027075128.1 313 YLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVINF 388
                     79********9885.677****************..999999*************************998.566677765 PP
4B356.93.7e-18411499395
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++++++ k++ l lp kfa+ +g+ k ++ +++++d + r W++kl  + +++r+vl++GW++  +angLk+gD   F+ ++ +++++vv 
  XP_027075128.1 411 VSTIKPYNIKRCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKIKL--KDRGDRVVLSSGWSKLSRANGLKVGDRYKFEIIK-KGKRPVVN 499
                     567799******************9998776.9***************..9999***************************998.77778886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLNYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFVVFEHEGN MVFEVLVFDP SHCERKYASI DDEKKCSQKF  120
KAAEIPRSKK VKLELSDDQE EPDSTDQICR PYFIFTVKPI NLLYHRLNIP RDFAMENGLF  180
GRECNIKLRD QSQRSWSLKI KSSSDCASIQ CGWKSFAKAQ GLKEGDEFVL ELTENGEAPA  240
FNFYGKDKAS TRKSGKEVSW RDEEPVNPHF TSTIEPHCIR RCVLVSHFVS CHNPFLWHAI  300
HYSCNIPGNP MQYLPMKFAR SNDLSNRSCK LILKDPKKRS WHAELNSRGS RVCISFGLDE  360
FFTANDLKEG DTCSFELVEN GETPVINFLT HLTKDDQPPP QPATDNHSYF VSTIKPYNIK  420
RCVLHLPVKF AKPNGLTKLK GEMIVKDDRQ RLWKIKLKDR GDRVVLSSGW SKLSRANGLK  480
VGDRYKFEII KKGKRPVVNF HCEFLKSEED SPTLTPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-50B3 family protein