PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075125.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 520aa    MW: 59757.3 Da    PI: 8.7539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-1425991598
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDfvvF+++g++ f   v vf+
  XP_027075125.1 25 GVKIPASFL-NYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFVVFEHEGNMVF--EVLVFD 99
                    5789*****.6655553.445799999999*******....443..5*************************99999..777776 PP
2B354.42.4e-171642401089
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ e
  XP_027075125.1 164 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTENGE 240
                     455689***********554.33458***************..8888889************************987533 PP
3B350.44e-163163911796
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ +
  XP_027075125.1 316 YLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVINF 391
                     79********9885.677****************..999999*************************998.566677765 PP
4B356.93.8e-18414502395
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++++++ k++ l lp kfa+ +g+ k ++ +++++d + r W++kl  + +++r+vl++GW++  +angLk+gD   F+ ++ +++++vv 
  XP_027075125.1 414 VSTIKPYNIKRCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKIKL--KDRGDRVVLSSGWSKLSRANGLKVGDRYKFEIIK-KGKRPVVN 502
                     567799******************9998776.9***************..9999***************************998.77778886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLNYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFVVFEHEGN MVFEVLVFDP SHCERKYASI DDEKKCSQKF  120
KAAATEEIPR SKKVKLELSD DQEEPDSTDQ ICRPYFIFTV KPINLLYHRL NIPRDFAMEN  180
GLFGRECNIK LRDQSQRSWS LKIKSSSDCA SIQCGWKSFA KAQGLKEGDE FVLELTENGE  240
APAFNFYGKD KASTRKSGKE VSWRDEEPVN PHFTSTIEPH CIRRCVLVSH FVSCHNPFLW  300
HAIHYSCNIP GNPMQYLPMK FARSNDLSNR SCKLILKDPK KRSWHAELNS RGSRVCISFG  360
LDEFFTANDL KEGDTCSFEL VENGETPVIN FLTHLTKDDQ PPPQPATDNH SYFVSTIKPY  420
NIKRCVLHLP VKFAKPNGLT KLKGEMIVKD DRQRLWKIKL KDRGDRVVLS SGWSKLSRAN  480
GLKVGDRYKF EIIKKGKRPV VNFHCEFLKS EEDSPTLTPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-50B3 family protein