PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074934.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 31618.9 Da PI: 4.417

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.5e-21	64	117	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k XP_027074934.1 64 KKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 117 56689************************************************9 PP
2	HD-ZIP_I/II	129.6	1.3e-41	63	153	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+++k++yd+l+++ +++ ke+e+L++e+ XP_027074934.1 63 EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQVKSSYDSLRSDYDSVVKENEKLKTEV 153 69*************************************************************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MDSGRIYFDP SCHGNMLFLG SGNPVFPGAR SVLNVEETLK RRPFLRSPEE LFDEEYYEEQ 60 LAEKKRRLTP EQVHLLEKSF EAENKLEPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ 120 LERDYDQVKS SYDSLRSDYD SVVKENEKLK TEVLSLTEKL QQGKEVVVEP RSKQKSDALP 180 VDELLASDPQ FNVKVEDRLS TGSGGSAVVD EDGPQLVDSG DSYFPCDDYA AGCVTPAADG 240 VQSEEDDGSD NGQNYLSNVF VAAEQQNQEG EPVGWWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-89	HD-ZIP family protein