PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074325.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 253aa    MW: 27664.4 Da    PI: 8.5096
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.5e-20136170135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp g+k+LCnaCG++++k+++
  XP_027074325.1 136 CANCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 170
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MMHGNRCNGG SHGNMAGPCS CGMFHTHQAN SFSMLFSMPN HHNKPFDETA EMYSFASSPP  60
SSSVDCTLSL GTPSTRLTNN DTEKRRSSYM SNFCWDILQS KHSSNSPHHS SHKSSRANSH  120
TNSNTGGGGG LLARRCANCD TTSTPLWRNG PKGPKSLCNA CGIRFKKEER RASAAAATSG  180
TNGVPGGADS QHMLNSSWVH HSQTQKMPYL SSAYGNEFRF IDDDDRDSDN GVPFLSWRLN  240
VTDRPSLVHD FTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.15e-47GATA family protein