PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074088.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 297aa MW: 33452.8 Da PI: 6.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	98	149	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P++ ++++ + a+i+ A++++k+L+ XP_027074088.1 98 QRMTHIAVERNRRRQMNDYLAVLRSMMPPS---YAQRGDQASIVGGAINFVKELE 149 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MALETIVFQQ DPFSYGCNQE FCDLWGLGIH ENQGKINSEI FEQGLISGAW ESSINSSSDT 60 STVEGSIAGS NPAPVVMPGR KRRRRTKSFK NKEEMENQRM THIAVERNRR RQMNDYLAVL 120 RSMMPPSYAQ RGDQASIVGG AINFVKELEQ LLQFLQSHKQ VKQQSSTIHS NLFDNFFTFP 180 QYSTCPSRQN MDNSMAADDA MAEKHSTIAD VEVTMAENHA NIKLLTRRRP KQLLTIITGF 240 HSLSLAILHL NITTRDHLVL YSFSVKVEDD CQLTSVNEIA TAVHDLVGMI HEEAVSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	84	RKRRR
2	80	86	RKRRRRT
3	99	110	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-74	bHLH family protein