PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073964.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 383aa MW: 41293.7 Da PI: 7.6641

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211	3e-65	132	301	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel................... 78 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++++a++++++++ XP_027073964.1 132 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLASLQQQQQQQQEQAQENQNQQQqqlqlhhghshrgenskrq 226 5789**************************************************999988887444443333331233333333333333222 PP DUF702 79 .kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++s+l +t+l+s++ + +e+ ++P+evs++avfrcvrvss+d++e+++aYqtav++gGhvfkGiLydqGle+ XP_027073964.1 227 rENRASSSLVCTRLPSNS--SGFEVGHFPAEVSTSAVFRCVRVSSIDENEDQFAYQTAVNVGGHVFKGILYDQGLES 301 233444444445544443..2355555*********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYR SDEYKGFEIW 60 HPQPQHQYHQ PHNQPEHHHF RHHNPALQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP 120 SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE 180 RQQQLASLQQ QQQQQQEQAQ ENQNQQQQQL QLHHGHSHRG ENSKRQRENR ASSSLVCTRL 240 PSNSSGFEVG HFPAEVSTSA VFRCVRVSSI DENEDQFAYQ TAVNVGGHVF KGILYDQGLE 300 SQYMTTESSS GGGSGSTTGV QQLNLITGTA ATATSTGTTT VSGGGGGGGG GGAAGSPFLD 360 PSMYPAPLNS YMAGTQFFPP PRS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYR SDEYKGFEIW  60
HPQPQHQYHQ PHNQPEHHHF RHHNPALQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP  120
SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE  180
RQQQLASLQQ QQQQQQEQAQ ENQNQQQQQL QLHHGHSHRG ENSKRQRENR ASSSLVCTRL  240
PSNSSGFEVG HFPAEVSTSA VFRCVRVSSI DENEDQFAYQ TAVNVGGHVF KGILYDQGLE  300
SQYMTTESSS GGGSGSTTGV QQLNLITGTA ATATSTGTTT VSGGGGGGGG GGAAGSPFLD  360
PSMYPAPLNS YMAGTQFFPP PRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-70	SRS family protein