PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073757.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 301aa    MW: 34771.1 Da    PI: 9.8743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14561311899
                     --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +vk+fr+
  XP_027073757.1  56 VPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TVKIFRT 131
                     5777888886666...357***************..**********************************9***..****996 PP
2B341.22.9e-132163001098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ + l+l+k f++++++k   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+ng++egD + + +d+  +++ +++v++
  XP_027073757.1 216 RTQMHKLMLSKGFISKNNIK--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNGMCEGDKFKLVFDE-GRGRKMITVCK 300
                     556688***********877..5568***************8766664.56899***************97777664.66666888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MCQYHLQLSK VSWFHRREKM VKPGRGRPRK DSSSSSYLSF MDARPEFFKV FLPDRVPPLF  60
VKKFSGLVCK RIKLRCIDGK IWDVDVEETQ EGVFMKNGWQ AFADHHLLKL GEFLVFRYDG  120
NSVFTVKIFR THGCKEEAFV REKIAADVKI EPLEDQIAAT EHTCAKHSCN SDGEGNKLDT  180
SRGVREGKQQ MSSRFHSQTV QTERDSEFGS IRSISRTQMH KLMLSKGFIS KNNIKLGSNV  240
MLCNEKEEKW PVKFTHFRDG RACIGTGWMA FWKDNGMCEG DKFKLVFDEG RGRKMITVCK  300
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-23B3 family protein