PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073729.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 294aa MW: 31956.6 Da PI: 6.0119

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.3	3.7e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q XP_027073729.1 4 SCNGCRVLRKGCSENCSIKPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQN 98 6********************************************************************************************** PP DUF260 91 kaelallk 98 ++e++l + XP_027073729.1 99 AVEAVLEG 106 *9998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLEGAPVS QIESEAAETH 120 NGPPLKAYDI RHVNKNEKSE GSGGLHRVRT RCRFKRSAVN KPKVVAKGWV GSGDDESAHE 180 EGNRSTSHES SLSHQSEAAR NVEGESQDTE SLASEETAEA EAGALERAEP ELSSEKDERA 240 GDGEIELELT LGLESTHSRT HGVKPKEVSK RIHEQGAFSV DGVCRMELGL DCSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-87	LBD family protein