PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073124.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24411.4 Da PI: 6.968

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	56	108	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_027073124.1 56 KRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 108 4589************************************************9 PP
2	HD-ZIP_I/II	118.8	2.9e-38	55	146	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+ev +L+e+++e XP_027073124.1 55 RKRKLSQEQVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHENTVVEKCRLETEVLKLKEQVSE 146 8***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTSSMSHQAD QQMVLISQYY PGIYSQLAPA EQGEVKSRRR RKKNRGGESS SSGVRKRKLS 60 QEQVNLLEIN FGSEHKLESE RKDRLASELG LDPRQVAVWF QNRRARWKSK KLEEEYSKLK 120 SEHENTVVEK CRLETEVLKL KEQVSEAEKE IHRLLERSDG VSSNSPSSSF SMEAIEPPFL 180 GEFGMEGFEN VFYVPETNYV NGLEWVNIYN M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	57	RRRRKKNRGGESSSSGVRKR
2	38	58	RRRRKKNRGGESSSSGVRKRK
3	39	58	RRRRKKNRGGESSSSGVRKR
4	39	59	RRRRKKNRGGESSSSGVRKRK
5	40	60	RRRRKKNRGGESSSSGVRKRK
6	41	61	RRRRKKNRGGESSSSGVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-56	HD-ZIP family protein