PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072582.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 428aa MW: 46652.3 Da PI: 7.3096

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.3	4.3e-26	176	219	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_027072582.1 176 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 219 79***************************************987 PP
2	QLQ	43.1	1.3e-15	98	130	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +F+ aQ+q+L+ Q+l++++++a++ vPpeLl + XP_027072582.1 98 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 130 7*****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI 60 SKLSSNLSAP YPNPTDSTPT PTKYPVRSGE AGGMGSYYFS LAQWQELELQ ALIFRHMLAG 120 AAVPPELLHH LVKKTLLNSS HHHHPYYAPH HHRHHYPPHF QSALLQSGYW GRASMDPEPG 180 RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG RNRSRKPVEI PTTRTATPGN GGANVCGGIL 240 KNSSFLVAQP LGSAMAAGGS VAGDTPHSAI SGSSPSIDIL HLSQRSSESI VRSQDDVHGD 300 DTRSSGQILR HFFDDWPRSL QESDDGGSNG TSATTNLSIS VSGNPTTSDF SLKLSTGDGD 360 DTTDAENVEW ERSQSNWGVT GAWGANQVAP MGGPLAEALR SSTSNSSPTS VLHQLQRRSA 420 SETSYVST

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI  60
SKLSSNLSAP YPNPTDSTPT PTKYPVRSGE AGGMGSYYFS LAQWQELELQ ALIFRHMLAG  120
AAVPPELLHH LVKKTLLNSS HHHHPYYAPH HHRHHYPPHF QSALLQSGYW GRASMDPEPG  180
RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG RNRSRKPVEI PTTRTATPGN GGANVCGGIL  240
KNSSFLVAQP LGSAMAAGGS VAGDTPHSAI SGSSPSIDIL HLSQRSSESI VRSQDDVHGD  300
DTRSSGQILR HFFDDWPRSL QESDDGGSNG TSATTNLSIS VSGNPTTSDF SLKLSTGDGD  360
DTTDAENVEW ERSQSNWGVT GAWGANQVAP MGGPLAEALR SSTSNSSPTS VLHQLQRRSA  420
SETSYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-59	GRF family protein