PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072394.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 347aa    MW: 38029.5 Da    PI: 6.6204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452122501255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_027072394.1 212 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 250
                     6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MNRGHLLQSS PVQQMMAGSP NWWNLNNMRP PSQQPSSFLA PPPNLFPQYM PPPPPSSWAD  60
NQELPESWSQ LLLGGLVAED QDQNKSGVMH AKKTLENWEE QLLQQQPPNG SNIVDHVKQE  120
NSAANGAYNM YGHENAEFHA AKTTWSQMMP VSSPTSCVTT LSSNMLDFSS SKSDGRHPPP  180
DRSSECNSTA IGGASKKARV QPSSTQSSFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL  240
EAIGYIRFLQ SQIEALSSPY LGSKSGNVRQ QQSAQGERNC LFPEDPGQLL NDNCMKRKAA  300
CEQDSEEEVK KDLRSRGLCL VPISCTLQVG SDNGADYWAP ALGGGFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-96bHLH family protein