PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072110.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 317aa MW: 35377.4 Da PI: 9.8099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	142	189	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RRd+i ++f+ L l+P + kKl+K+++ e +++++k+Lq XP_027072110.1 142 QEHLVAERKRRDKISQRFACLSALVPGL-----KKLDKSSVIEGTIKHLKELQ 189 57889*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MNKMKLTTGQ SVNTCYLSFA SPASFKYCSS SPSNSGPHRT SRTTILKPSI SKFCTSDQET 60 FKRPSSLPPT NTISFGNLKS PNSGDHQHHE ELSFSTKTKV TVLPLNFSTG CPSYFEEPDQ 120 YAATGYQLPV KRTGTRTPSQ AQEHLVAERK RRDKISQRFA CLSALVPGLK KLDKSSVIEG 180 TIKHLKELQE RLKALEEGRN REHGQESVVY QKKPCIRFHQ EASLSSFDQS LTNLEVRILK 240 GNVLVKACCR RRSGFTDAFL HAMEKLDLVI ESCSFMPFAD NLLAISAAAK MNDGFSMTEE 300 NLANNIRLAI VKLIHPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	ERKRRD
2	149	154	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	3e-41	bHLH family protein