PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072029.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family RAV
Protein Properties Length: 367aa    MW: 41588.3 Da    PI: 7.3775
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-0995142155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++kGV   + +g W A+I+       + r++lg+f ++ +Aa a++ a+ kl+g
  XP_027072029.1  95 TRFKGVVAQR-NGHWGAQIYA------HDRIWLGTFKSEIDAAMAYDSAAIKLRG 142
                     5799**7555.8*******99......7**********99*************98 PP
2B380.51.6e-25211306183
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f k+ltpsdv+k++rlv+pkk+a  +                   e + +l++ d+s rsW+++++y+k+s+++v+t+GW++Fv+++gL+++D v
  XP_027072029.1 211 FHKELTPSDVGKLNRLVVPKKYALMYfprlncdvqetdqdiA--GEDDAELVFFDTSMRSWKFRYCYWKSSQSFVFTRGWNKFVRDKGLRAKDLV 303
                     89******************************9998888442..346789********************************************* PP

                     EEE CS
              B3  81 vFk 83 
                     +F+
  XP_027072029.1 304 IFS 306
                     **9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MAIIEVARTQ LKTYNSSLNL CLCIVCNMSI RSYLYNGSII LAKELSIAPD CVTMQEESEI  60
CGTATNSIQE IFDSNSSSHL IQNKRQKQDT DVASTRFKGV VAQRNGHWGA QIYAHDRIWL  120
GTFKSEIDAA MAYDSAAIKL RGGDSYRNFP WTSITKEEPK FQSQFSTQAV LNMIKDGIYP  180
TKFVEYLRAQ SFVQSFATVP SNEGFLCKKL FHKELTPSDV GKLNRLVVPK KYALMYFPRL  240
NCDVQETDQD IAGEDDAELV FFDTSMRSWK FRYCYWKSSQ SFVFTRGWNK FVRDKGLRAK  300
DLVIFSQCEF KDGSDELQSV LMIDGGFHES FHGALMTNSS KGENNLPEME QNGSVKGGLK  360
LFGVQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.16e-91RAV family protein