PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071405.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 530aa MW: 59281.7 Da PI: 6.3976

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	434	481	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v ++G g+W++I + + +Rt+ ++k++w+++l XP_027071405.1 434 WTVSEVKKLIDGVSEYGVGRWSRIKKDLFpssAHRTPVDLKDKWRNLL 481 ************************9988**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MEDESAIPVL EDEAIQFECL LVEPQDDHVS VDAFLCFHRN SPEKCMEMED IPCKFGGDNF 60 GTDPERKHLL GQERGLDIKH SEIEAENFLA PNGPSSVCED YLLDADFGEN GKNLDHDSSI 120 ELQKLVSGSY DPADNAGDNE TSHKSDLSGP TVLNKCMGDP DMNDSTSHDI FSCTADSEMS 180 LEERWFKYPT FTVENMEEDV SSLFLESNNK TMGCTHNVAS GEVLCPLTAN QETKHVPMGE 240 NKNVSLLGKD ASPSKSPIQA SIATHAEKRL RKPPQRFIDE LSEPKSRPPK RREVSTPSSR 300 GKFPRVGSHK HCDIKSRAER LSSEDSAGKA IQVPFGPIVH KEGRTSCALP LVPKESRASR 360 APIVAKVLQL DKKPLLQPHK QAFVPRHKEA VLQPHKEAVL QPHNEASVDE SEEDDIAEVK 420 LGEDGGRRKH HILWTVSEVK KLIDGVSEYG VGRWSRIKKD LFPSSAHRTP VDLKDKWRNL 480 LKASCAQIEG KKGEDRKRNL AWRPLPKTIL RRVSELATIH PYPRDLRSKR

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MEDESAIPVL EDEAIQFECL LVEPQDDHVS VDAFLCFHRN SPEKCMEMED IPCKFGGDNF  60
GTDPERKHLL GQERGLDIKH SEIEAENFLA PNGPSSVCED YLLDADFGEN GKNLDHDSSI  120
ELQKLVSGSY DPADNAGDNE TSHKSDLSGP TVLNKCMGDP DMNDSTSHDI FSCTADSEMS  180
LEERWFKYPT FTVENMEEDV SSLFLESNNK TMGCTHNVAS GEVLCPLTAN QETKHVPMGE  240
NKNVSLLGKD ASPSKSPIQA SIATHAEKRL RKPPQRFIDE LSEPKSRPPK RREVSTPSSR  300
GKFPRVGSHK HCDIKSRAER LSSEDSAGKA IQVPFGPIVH KEGRTSCALP LVPKESRASR  360
APIVAKVLQL DKKPLLQPHK QAFVPRHKEA VLQPHKEAVL QPHNEASVDE SEEDDIAEVK  420
LGEDGGRRKH HILWTVSEVK KLIDGVSEYG VGRWSRIKKD LFPSSAHRTP VDLKDKWRNL  480
LKASCAQIEG KKGEDRKRNL AWRPLPKTIL RRVSELATIH PYPRDLRSKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	292	RPPKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-29	MYB_related family protein