PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070600.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 381aa MW: 42819.9 Da PI: 8.968

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.7e-15	107	152	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ XP_027070600.1 107 RGHWRPYEDAKLKELVCQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 152 899***************************.*********996 PP
2	Myb_DNA-binding	56.3	7.3e-18	159	202	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ XP_027070600.1 159 KMAFSEEEEERLLAAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 202 679*****************.*****.*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MNFQHKGDGD SLQYGFQGVN SSSPPIPKVP IPMDFPWEGE SDLNIRRGMI QYLIAGPSEQ 60 QVKMPWCFHL VGDHGREARR EDDGRVDQET QESKKKNGGG HTKLCSRGHW RPYEDAKLKE 120 LVCQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKM AFSEEEEERL LAAHRMYGNK 180 WAMIARLFPG RTDNAVKNHW HVIIARKQRE ENSVYRRRKP SSFQAYHKGF TVNTLQNSAC 240 NGSDVSTNNR EESASTCTDL SLTPSSNRVS PGYFTSSVSA EKYHFLGPDL NQAASSGDER 300 KVMKTRGAVQ YCQLNNNGPI AKATVTINPS AQSDSSSELS ASESVANNAS TRLLLLNDKI 360 ENGIESYKLP FIDFLGVGAR K

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MNFQHKGDGD SLQYGFQGVN SSSPPIPKVP IPMDFPWEGE SDLNIRRGMI QYLIAGPSEQ  60
QVKMPWCFHL VGDHGREARR EDDGRVDQET QESKKKNGGG HTKLCSRGHW RPYEDAKLKE  120
LVCQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKM AFSEEEEERL LAAHRMYGNK  180
WAMIARLFPG RTDNAVKNHW HVIIARKQRE ENSVYRRRKP SSFQAYHKGF TVNTLQNSAC  240
NGSDVSTNNR EESASTCTDL SLTPSSNRVS PGYFTSSVSA EKYHFLGPDL NQAASSGDER  300
KVMKTRGAVQ YCQLNNNGPI AKATVTINPS AQSDSSSELS ASESVANNAS TRLLLLNDKI  360
ENGIESYKLP FIDFLGVGAR K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	7e-66	MYB family protein