PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070406.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 421aa MW: 46253.3 Da PI: 9.0607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	349	394	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq XP_027070406.1 349 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 394 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MYGDSQALSS DDSSIFHSSW NAKEALFAQS RELFMDSVSA SSTNYNSLEF NNQYTSANQN 60 SSGLLRFRSA PSSLLESLSA DDKIVKSSVE NRGLTSRFNS SCEAQSNQVS HSSSTNGYTL 120 KSQLPPQYPR ASRGTLAQLG SVNGVYRVPG SMAMDHQRQP KMSPTLTRQN SSPAELFSHL 180 TAQSGYATMR GVGNYRLTNG ASGDLSPSSN RFKGPMSFSS GSPTTLGMLS RISEVENETG 240 GADGSNDDKL GNTNGDTQLY GSGFRFGSWN NSSKFAENLT GLKREIDYDQ NLFSDSQGGE 300 PRNRPNILSH HLSLPNTAEL AAMDKLMQFQ DTVPCKIRAK RGCATHPRSI AERVRRTRIS 360 ERMRKLQDLV PNMDKQTNTA DMLDLAVDYI KDLQKQYKTL SDIRANCKCS AMQKPVPDQM 420 V

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MYGDSQALSS DDSSIFHSSW NAKEALFAQS RELFMDSVSA SSTNYNSLEF NNQYTSANQN  60
SSGLLRFRSA PSSLLESLSA DDKIVKSSVE NRGLTSRFNS SCEAQSNQVS HSSSTNGYTL  120
KSQLPPQYPR ASRGTLAQLG SVNGVYRVPG SMAMDHQRQP KMSPTLTRQN SSPAELFSHL  180
TAQSGYATMR GVGNYRLTNG ASGDLSPSSN RFKGPMSFSS GSPTTLGMLS RISEVENETG  240
GADGSNDDKL GNTNGDTQLY GSGFRFGSWN NSSKFAENLT GLKREIDYDQ NLFSDSQGGE  300
PRNRPNILSH HLSLPNTAEL AAMDKLMQFQ DTVPCKIRAK RGCATHPRSI AERVRRTRIS  360
ERMRKLQDLV PNMDKQTNTA DMLDLAVDYI KDLQKQYKTL SDIRANCKCS AMQKPVPDQM  420
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-90	bHLH family protein