PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070192.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 492aa    MW: 57020.6 Da    PI: 4.4013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-161596188
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                    ffk ++p   +++ r+ +p  f+ ++ + k  s    l+d+ g++W v++   + ++ +++ +GW eFv++n ++ gDf+vF++dg+s
  XP_027070192.1 15 FFKFFIP--DSSKERMKIPSAFT-SYLKAK-LSPRAYLRDRFGNKWPVRV--GRIGDDFFFLDGWAEFVEENSVELGDFLVFQYDGHS 96
                    7888844..4555679******9.773333.5568***************..99999999999*********************9853 PP
2B335.12.3e-11400481993
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + +++ l++p + +++h++k   +++++l d++gr+W+ + +++k + r++  +GW++ ++ n +   D+++ +++++ ++ l+
  XP_027070192.1 400 RARRQDALYVPHDILRDHNLK--LPQEIILVDQQGREWTSTRNHWKDG-RFWYHGGWSSLCRVNIVGFDDICICEFKRKVGGGLY 481
                     5567789***********999..7889***************999996.788899******************998877554455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MESSRMHDNQ RLRAFFKFFI PDSSKERMKI PSAFTSYLKA KLSPRAYLRD RFGNKWPVRV  60
GRIGDDFFFL DGWAEFVEEN SVELGDFLVF QYDGHSLYDV KLLGHSACEK KGVGALKVLK  120
HEEEEQMEEA CEVKEVEGEE EEEADEADEA NEVKKEEQEE DNWEKEEEEG EEETNEDKQG  180
EMEESYSNAT EIDTDQDYIM EEEEDFTEEE EEEEENKDME EEQPSKADIT ATPGTSKSTY  240
KGLRKIKGGK QGNNSLEVNE VETEGEKEQD ADEIEQKKEG EGEINEDKQE KEMGKCYSNT  300
IETEANSDYM MEAEDDSTQK EEEGNVEEEP AAKTHSKVAT VDSKSSSKGK KKIRGGKHES  360
KAVKGHKRRR RWLIDPYGYD LFKSGCISQP KNPYFVTQKR ARRQDALYVP HDILRDHNLK  420
LPQEIILVDQ QGREWTSTRN HWKDGRFWYH GGWSSLCRVN IVGFDDICIC EFKRKVGGGL  480
YIEVQILRPQ DI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350371KKKIRGGKHESKAVKGHKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.18e-18B3 family protein