PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027070142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 43715.5 Da PI: 5.6643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 59 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + XP_027070142.1 59 KGPWSQEEDAILGRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.4e-17 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Iar + gRt++ +k++w++ XP_027070142.1 111 RKPFTDEEDSIILQAHAIHGNK-WASIARLLL-GRTDNAIKNHWNST 155 789*******************.********9.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MQVVTANDGS ANVITSEKRD SDDGEDGVVL IEDGSGSGGV GGSSRSSQAN SKKSLDRVKG 60 PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RKPFTDEEDS 120 IILQAHAIHG NKWASIARLL LGRTDNAIKN HWNSTLRRRC MDSDKFKFDS SQVMEDASAE 180 KSKASSNETL SCGDVNSSKS LDSKDVSSKE KMDDEQHEIS TQTDYQCSSE AGDPPSLFRP 240 VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSGS GMSNLFQAAY GDQLIPHQCG 300 HCCFASSGTA ESRTSLLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA 360 ANSVMSSRSH LQIRAPEGIR MYDSLEDRKC RLMGMMTEPV TSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 3e-84 | MYB family protein |