PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070113.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 359aa MW: 39765.3 Da PI: 8.7412

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	111	188	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl+ ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr++q+ XP_027070113.1 111 RCQVEGCNLDLTAAKDYHRRHRICESHSKSPKVIVAGVERRFCQQCSRFHNLSEFDDKKRSCRRRLSDHNARRRRPQP 188 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEFELTKYPA SMHSQDSAMD GGKATELDRD YFGTVNSWPN ENRKEEDFIG VEKGESYSAP 60 AASLGFDQPV VGLKLGMPKD SKHLSSITNS SLSSNSGKRS RASHQGMQTS RCQVEGCNLD 120 LTAAKDYHRR HRICESHSKS PKVIVAGVER RFCQQCSRFH NLSEFDDKKR SCRRRLSDHN 180 ARRRRPQPDA MHLSSMGLPS SLYGRRAPSF LLSRMPSSSS NRTWECSSGL KMANAGNSLI 240 RASGVDVSPG HAQSHLNESQ NLPCALSLLS TPSWALHEPE SASLEQLMQG SVSIPQPASQ 300 LESQNWHLIS EARVSAEQAP SVTPFHSMAL QNTDNSHLPG YRSFKPPYDS GFHFTSRIN

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEFELTKYPA SMHSQDSAMD GGKATELDRD YFGTVNSWPN ENRKEEDFIG VEKGESYSAP  60
AASLGFDQPV VGLKLGMPKD SKHLSSITNS SLSSNSGKRS RASHQGMQTS RCQVEGCNLD  120
LTAAKDYHRR HRICESHSKS PKVIVAGVER RFCQQCSRFH NLSEFDDKKR SCRRRLSDHN  180
ARRRRPQPDA MHLSSMGLPS SLYGRRAPSF LLSRMPSSSS NRTWECSSGL KMANAGNSLI  240
RASGVDVSPG HAQSHLNESQ NLPCALSLLS TPSWALHEPE SASLEQLMQG SVSIPQPASQ  300
LESQNWHLIS EARVSAEQAP SVTPFHSMAL QNTDNSHLPG YRSFKPPYDS GFHFTSRIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	185	KKRSCRRRLSDHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-45	SBP family protein