PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069984.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 300aa MW: 33836.3 Da PI: 6.8088

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.4e-09	28	73	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ ++ +W +a +++ g+t +++ ++ XP_027069984.1 28 KWTPEENKRFENALALFDKDtpdRWFNVATMIP-GKTVSDVIKQYRE 73 7******************************.*****999986 PP
2	Myb_DNA-binding	46.2	1.1e-14	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky XP_027069984.1 135 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MSRGMEILSP SPYLGNSSWL FEESKGAKWT PEENKRFENA LALFDKDTPD RWFNVATMIP 60 GKTVSDVIKQ YRELVDDVGD IEAGLIPIPG YTGDSFTLEW VNDHDYDGLK QFYGPGGKRN 120 SSNRYSDHER KKGVPWTEEE HRQFLLGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF 180 IRQLSGGKDK RRSSIHDITT VNLAEKKSPS PDDDRPPSTD ESSPVLQPSA NSDMNGISKA 240 FYDYNPPNQG ATMAFHLSNS STTSTPHQII SYGQRPSDRN THGIALHGFQ FGDDNSFFQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-112	MYB family protein