PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069703.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25441.8 Da PI: 8.3489

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k XP_027069703.1 63 KKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 116 56679************************************************9 PP
2	HD-ZIP_I/II	115.1	4.1e-37	62	154	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+++k+++d +++e+++L++ev +Lr+ lke XP_027069703.1 62 QKKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDTVKQELDVVSREKQKLQEEVVALRAILKE 154 69**************************************************************************************88875 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MDWNGNLRPP FISRPTDTSL GFFYNYNYDP YQVIEMKHAL QAPHAAVVST MDKTIGYGNQ 60 DQKKKRLTTD QLESLESSFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKAKQL 120 ERLYDTVKQE LDVVSREKQK LQEEVVALRA ILKEQVGKKP VSTGYTEMSG EETVESTSIP 180 SSSKPRGVGG NNLQTAECSY VFNVDDYNPV MPPYWAGLPS YP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	92	KKKRLTTDQLESLESSFQEEIKLDPDRKMK
2	111	119	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-48	HD-ZIP family protein