PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069391.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 883aa MW: 98244.9 Da PI: 7.0568

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.9	1.8e-18	298	398	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027069391.1 298 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 390 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_027069391.1 391 LLMGFRKA 398 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKTL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ 120 SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI 180 KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFLQGSRSR HLLPKPVKSI 240 MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK 300 VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY 360 VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQDNKHLSSI PKGSFSSEPF 420 FLPGADNLHS ANSQSALLDS VKGSGVFPLS ALSKHFSAVE FGWHIAEMNG EKTLDGIFPS 480 SMLVPERKRS RNIGSKSKRL LIDSQDAFEL KLSWEELQDM LCPPPCVKPS TVAIEDHEFE 540 EYDQPPVFGK KSIFTMRQSG EQEQWAQCDS CLKWRRLPVN VLLPPKWTCQ EHTWALSRPS 600 CSGPEDLSPH ELESLLKMSK EHKKQKIASG LKSAHEHESS DPDGLGNSKA VRGDTSGTSA 660 ASIATTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE 720 REAEIAQRNK FDWVSKEEAE VESYQQLVIP HDSLENHKRL GSESEFLSQS NKQSEKLEEI 780 GKEQLDLNCH PDRENLQQSS SRVSMVSLLQ EASLPLQTYL KQNGLTSLVS DQRVSSGSNV 840 LLPQVTRESE VQFDEDQCLS HEIQEQEVKE ELSETDQAGN DPS

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKTL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ  120
SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI  180
KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFLQGSRSR HLLPKPVKSI  240
MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK  300
VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY  360
VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQDNKHLSSI PKGSFSSEPF  420
FLPGADNLHS ANSQSALLDS VKGSGVFPLS ALSKHFSAVE FGWHIAEMNG EKTLDGIFPS  480
SMLVPERKRS RNIGSKSKRL LIDSQDAFEL KLSWEELQDM LCPPPCVKPS TVAIEDHEFE  540
EYDQPPVFGK KSIFTMRQSG EQEQWAQCDS CLKWRRLPVN VLLPPKWTCQ EHTWALSRPS  600
CSGPEDLSPH ELESLLKMSK EHKKQKIASG LKSAHEHESS DPDGLGNSKA VRGDTSGTSA  660
ASIATTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE  720
REAEIAQRNK FDWVSKEEAE VESYQQLVIP HDSLENHKRL GSESEFLSQS NKQSEKLEEI  780
GKEQLDLNCH PDRENLQQSS SRVSMVSLLQ EASLPLQTYL KQNGLTSLVS DQRVSSGSNV  840
LLPQVTRESE VQFDEDQCLS HEIQEQEVKE ELSETDQAGN DPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	704	715	KRRFKTLMMRKK
2	704	717	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein