PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069045.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 229aa MW: 25341.2 Da PI: 6.9346

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.5e-16	26	86	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ XP_027069045.1 26 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 86 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.7	6.9e-35	25	88	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q XP_027069045.1 25 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 88 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MEDQEQDQTN QASHGSESSE RNEPVRSRWT PKPEQILILE SIFNSGMVNP PKDETVRIRK 60 LLEKFGSVGD ANVFYWFQNR RSRSRRRQRQ IQASLSGEVQ VQTRTAGATA TAIPYETSCC 120 AGFSNSMSFL PLSASASSAS CLGQIGQPEI AQTSSSINPR SHYQSGLISV FINGVATELP 180 RGPFDLRATF GQDFLLFHSS GVPVSVSEYG FLLESLQHGE SYFLVQRPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.1	7e-36	WOX family protein