PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068833.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 280aa    MW: 30902.9 Da    PI: 8.9764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +vk++G+g Wk I r          R+  ++k++w+++
   XP_027068833.1  5 KQKWTSEEEEALRAGVKKHGTGKWKNIQRDPEfshllFSRSNIDLKDKWRNL 56
                     79*********************************9989***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV KKHGTGKWKN IQRDPEFSHL LFSRSNIDLK DKWRNLTVSA  60
SNGLGPREKS KAQKGKAISD APATPLPITQ VPASSTPLSL EVPADVAADD SSKCLLDGKT  120
ASKYNGMIHE ALSTLKEPNG SDTSTIVNFI EQRHEVPPNF RRLISARLRR LVAQEKLEKV  180
QNSYRIKKDL LEGSKTPVPK PRDVQPRQAQ SIGHLADTVE EATVSAAYTI AEAENKSFVV  240
AEAVKESERV SRMSEDAESM LQLAHEIFDR SSHGEMVLVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-73MYB_related family protein