PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068805.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 762aa MW: 86144.5 Da PI: 5.1763

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.1e-19	601	648	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027068805.1 601 ITHEVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKERKV 648 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MATEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KTPHLSLSAA 60 ADAAVIKTDI KWFMQLDTET IMWWRCLVQF WGLVRIGDKT YLTTCDQPFA LCYYFDPDVK 120 PLCEYRKLCL ECLIPVDDDD DDDVELIIGP PGRVFRSGFP EYAEDVHDYT SREYPQRDYA 180 VDRARYYWAL PIYHPTRHLP VGVLEIVSPY VVGDLPRRQV LEKLQNQLQK VNLTTTCVRL 240 AEASSCQDGE IAKIDKALRN TKSIFKRPKH GLYYSETWTT SGEILSSREG VDFIRKGQGV 300 VGRAFSSKSA CFCRDVRQLS ITEYPLVPNA RHYGDSACFA VCLQSSCSSN CIYVLEFFLP 360 TNEKDYGDCR IMLNSIMEKL KKYLRSSFKI ALGQELGQKL TVEVIKVTPE DEFDSFEICS 420 TTGIESTPRL GKVQGGEGMM QLDFSSQQVD AANGSMNGSV ESTPRLAKAQ GGEGMMQVDF 480 SSQQVDAANA YMNGVHGQQS GIVAKAPEHA QDFVNISYQE LNLAGVDVAH NSMNGIYEQQ 540 DGIVRSSIGQ VLMQNMVSIA DYEPIVEDPK RDDASIEQSG NEVTNLKMQE PSCTLKSDLG 600 ITHEVLEQNS MRKLEDAAKN IGVSRSTLKR ICREYGIHRW PPRKERKVNQ VFAKQKVVQP 660 AIENVEEHHW LDATRLEDDS SMWMIKAKYQ EDKIKFELSS SARKIDLENN IAQRFNLSGG 720 SFKIKYQDEL NDWILITCDT DLSFCMKTLQ KLGRTTIEMW VS

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MATEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KTPHLSLSAA  60
ADAAVIKTDI KWFMQLDTET IMWWRCLVQF WGLVRIGDKT YLTTCDQPFA LCYYFDPDVK  120
PLCEYRKLCL ECLIPVDDDD DDDVELIIGP PGRVFRSGFP EYAEDVHDYT SREYPQRDYA  180
VDRARYYWAL PIYHPTRHLP VGVLEIVSPY VVGDLPRRQV LEKLQNQLQK VNLTTTCVRL  240
AEASSCQDGE IAKIDKALRN TKSIFKRPKH GLYYSETWTT SGEILSSREG VDFIRKGQGV  300
VGRAFSSKSA CFCRDVRQLS ITEYPLVPNA RHYGDSACFA VCLQSSCSSN CIYVLEFFLP  360
TNEKDYGDCR IMLNSIMEKL KKYLRSSFKI ALGQELGQKL TVEVIKVTPE DEFDSFEICS  420
TTGIESTPRL GKVQGGEGMM QLDFSSQQVD AANGSMNGSV ESTPRLAKAQ GGEGMMQVDF  480
SSQQVDAANA YMNGVHGQQS GIVAKAPEHA QDFVNISYQE LNLAGVDVAH NSMNGIYEQQ  540
DGIVRSSIGQ VLMQNMVSIA DYEPIVEDPK RDDASIEQSG NEVTNLKMQE PSCTLKSDLG  600
ITHEVLEQNS MRKLEDAAKN IGVSRSTLKR ICREYGIHRW PPRKERKVNQ VFAKQKVVQP  660
AIENVEEHHW LDATRLEDDS SMWMIKAKYQ EDKIKFELSS SARKIDLENN IAQRFNLSGG  720
SFKIKYQDEL NDWILITCDT DLSFCMKTLQ KLGRTTIEMW VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	8e-38	Nin-like family protein