PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068737.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 538aa MW: 57938.3 Da PI: 7.9456

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	6e-15	148	206	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027068737.1 148 IFRGVTRHRWTGRYEAHLWDnTCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 206 69****************665564477446***********************98 PP
2	AP2	47.2	5.7e-15	249	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027068737.1 249 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 300 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MDSSHPNWLA FSLSNHPLFE AFNSLTSSSG AVVRAEEDNG NNGASVTAAA DLSTVLNCSS 60 PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES 120 QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR 180 QVYLGGYDKE EKAARAYDLA ALKYWGPTTT TNFPVSNYEK ELEEMKHMTR QEFVASLRRK 240 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG 300 LNAVTNFDIS RYDVKSIASS NLPVGGISNN KSNNNNKTSS DSLSDNKSAD GSNRSDDRDH 360 SSATSVSFVS QPSTSALGFG LPIKQNTPST SDFWSSLGYH NNNVTAKIPT PTAIPLFQNP 420 STPNGTTLQC TTPSFNVDYP TNNNNNGYFG GGVYFQQQHQ QSNVLGGGGG NGNGTGTNSS 480 SPSEQVPFVT RIALSSSNGT GSTYDAANFG NWISPTLHSF QPAKPNLSVF QTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MDSSHPNWLA FSLSNHPLFE AFNSLTSSSG AVVRAEEDNG NNGASVTAAA DLSTVLNCSS  60
PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES  120
QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR  180
QVYLGGYDKE EKAARAYDLA ALKYWGPTTT TNFPVSNYEK ELEEMKHMTR QEFVASLRRK  240
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  300
LNAVTNFDIS RYDVKSIASS NLPVGGISNN KSNNNNKTSS DSLSDNKSAD GSNRSDDRDH  360
SSATSVSFVS QPSTSALGFG LPIKQNTPST SDFWSSLGYH NNNVTAKIPT PTAIPLFQNP  420
STPNGTTLQC TTPSFNVDYP TNNNNNGYFG GGVYFQQQHQ QSNVLGGGGG NGNGTGTNSS  480
SPSEQVPFVT RIALSSSNGT GSTYDAANFG NWISPTLHSF QPAKPNLSVF QTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-138	AP2 family protein