PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068440.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 120aa    MW: 13847.1 Da    PI: 10.1348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.93.6e-10247449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    e k n +  fskR n ++ KA+ L++L +ae a+++fs+  k y +
  XP_027068440.1  2 EKKNNLHAIFSKRCNDLFMKANQLCTLNGAELALLVFSPGKKAYAF 47
                    567788889******************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MEKKNNLHAI FSKRCNDLFM KANQLCTLNG AELALLVFSP GKKAYAFGHS SFEFVTDKFL  60
GNKSSTSIHG GTYHHMIQEG QHKNWWQEPI EEMNLEQLLK LKKALKGLKK KVEDEVKRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-20M-type_MADS family protein