PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068389.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HRT-like

Protein Properties

Length: 650aa MW: 71314 Da PI: 9.7695

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	51.4	1.8e-16	290	320	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++G vCkr P++g+KRC eHKGm++ XP_027068389.1 290 ICGVALGHGVVCKRAPAEGNKRCSEHKGMKV 320 8****************************97 PP
2	HRT-like	51.8	1.4e-16	350	379	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil+dGs+C+ +Pv+g+KRC eHKG++i XP_027068389.1 350 CGVILDDGSCCTSKPVQGNKRCLEHKGRKI 379 ***************************997 PP
3	HRT-like	55.1	1.3e-17	417	447	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dG++C+rqP RKRCeeHKG+Ri XP_027068389.1 417 ICGVDLDDGTFCTRQPPAARKRCEEHKGKRI 447 8*****************************7 PP
4	HRT-like	53	5.7e-17	493	522	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CG+++ dGs+C+r+P +g+KRC++HKGmR+ XP_027068389.1 493 CGAATHDGSFCSRKPTEGNKRCWQHKGMRV 522 *****************************7 PP
5	HRT-like	46.1	7.9e-15	551	580	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++l++Gs C+r+P g+KRC +HKG+R XP_027068389.1 551 TCGAALQNGSHCSRKPTNGNKRCSQHKGRR 580 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MESGERAPPS ITLSVEAMEK SVTALATISS SSRLKREDCR RTKHDSAFSP WKVLIGPSDW 60 EDHSNGKEGA ERYRTQNLPN CTSCTGVYEL GTAVWRSKSR RDAGKLDPDF IIPVYLGKSD 120 NVRNRLQQYG REGAHLENGS SNTKLNGCNG SLAQTGSGLF KDIFSEGFSI VYRWAPMKSA 180 RDADKTESDL LGKFDYAWNK GSNGPRRHND ILKMLDRISK TSPFMAKLQV LSQKKKGIKI 240 KAYKPPFVEN GLDFYTSLET NGLLPQIFKF GRSQPRLIVR SVINENYISI CGVALGHGVV 300 CKRAPAEGNK RCSEHKGMKV NGFTSKLLKD GKSTLVANEY PINKTFTPPC GVILDDGSCC 360 TSKPVQGNKR CLEHKGRKIN NFPQLVNDKK ANYVYGPVLD YNTSLSKAGH TDSSSTICGV 420 DLDDGTFCTR QPPAARKRCE EHKGKRIKET ISISHRDEIP SSFIHSGPKI GIQESQNHSL 480 IPSVFCDITS PACGAATHDG SFCSRKPTEG NKRCWQHKGM RVDASPTSSS CNNSRRSSTS 540 LQYASEDFTS TCGAALQNGS HCSRKPTNGN KRCSQHKGRR ADLSPRNSND FRRSTAGGRC 600 WQHEGYANSY SYASYGSAYG NFSSTCGAPT RSGSSCSRST AGGRCWQHGG

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MESGERAPPS ITLSVEAMEK SVTALATISS SSRLKREDCR RTKHDSAFSP WKVLIGPSDW  60
EDHSNGKEGA ERYRTQNLPN CTSCTGVYEL GTAVWRSKSR RDAGKLDPDF IIPVYLGKSD  120
NVRNRLQQYG REGAHLENGS SNTKLNGCNG SLAQTGSGLF KDIFSEGFSI VYRWAPMKSA  180
RDADKTESDL LGKFDYAWNK GSNGPRRHND ILKMLDRISK TSPFMAKLQV LSQKKKGIKI  240
KAYKPPFVEN GLDFYTSLET NGLLPQIFKF GRSQPRLIVR SVINENYISI CGVALGHGVV  300
CKRAPAEGNK RCSEHKGMKV NGFTSKLLKD GKSTLVANEY PINKTFTPPC GVILDDGSCC  360
TSKPVQGNKR CLEHKGRKIN NFPQLVNDKK ANYVYGPVLD YNTSLSKAGH TDSSSTICGV  420
DLDDGTFCTR QPPAARKRCE EHKGKRIKET ISISHRDEIP SSFIHSGPKI GIQESQNHSL  480
IPSVFCDITS PACGAATHDG SFCSRKPTEG NKRCWQHKGM RVDASPTSSS CNNSRRSSTS  540
LQYASEDFTS TCGAALQNGS HCSRKPTNGN KRCSQHKGRR ADLSPRNSND FRRSTAGGRC  600
WQHEGYANSY SYASYGSAYG NFSSTCGAPT RSGSSCSRST AGGRCWQHGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-94	HRT-like family protein