PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068304.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 411aa MW: 45045.5 Da PI: 7.3192

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.3	4.1e-26	173	216	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_027068304.1 173 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 216 79***************************************987 PP
2	QLQ	43.2	1.2e-15	95	127	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +F+ aQ+q+L+ Q+l++++++a++ vPpeLl + XP_027068304.1 95 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 127 7*****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MDFNPKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI 60 SKLSSNLSAP CPNPTDSTPT PTKYPGEAGG MGSYYFSLAQ WQELELQALI FRHMLAGAAV 120 PPELLHHLVK KTLLNSSHHH HPYYAPHHHR HHYPPHFQSA LLQSGYWGRA SMDPEPGRCR 180 RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEIPTT RTATPGNGGA NVCGGILKNS 240 SFLVAGDTPH SAISGSSPSI DILHLSQRSS ESIVRSQNDV HGDDTRSSGQ ILRHFFDDWP 300 RSLQESEDGG SNGTSATTDL SISVSGNATN SDFSLKLSTG DGDDTTDAEN VERERSQSNW 360 GVTGTWGANH VAPMGGPLAE ALRSSTSNSS PTSVLHQLQR RSASETSYVS T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MDFNPKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI  60
SKLSSNLSAP CPNPTDSTPT PTKYPGEAGG MGSYYFSLAQ WQELELQALI FRHMLAGAAV  120
PPELLHHLVK KTLLNSSHHH HPYYAPHHHR HHYPPHFQSA LLQSGYWGRA SMDPEPGRCR  180
RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEIPTT RTATPGNGGA NVCGGILKNS  240
SFLVAGDTPH SAISGSSPSI DILHLSQRSS ESIVRSQNDV HGDDTRSSGQ ILRHFFDDWP  300
RSLQESEDGG SNGTSATTDL SISVSGNATN SDFSLKLSTG DGDDTTDAEN VERERSQSNW  360
GVTGTWGANH VAPMGGPLAE ALRSSTSNSS PTSVLHQLQR RSASETSYVS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	5e-61	GRF family protein