PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068075.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 783aa MW: 85734 Da PI: 9.34

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.7e-10	30	76	4	41
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.........kgRtlkqck 41 W t+Ed+llv+av+++G+++W+++a +++ + +t+ +c+ XP_027068075.1 30 WGTWEDLLLVCAVNRYGTNSWESVALEIQkrstspflsLSLTPRNCQ 76 *****************************655555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MAGPNGATGD YGNESEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR 60 STSPFLSLSL TPRNCQMKYL DLTRRFLFKH DPRNTDNAYK DDDVEAAGHD GSIISTDESV 120 PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE 180 EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NNKDEQSVNG SVPKDGRVGE IEAGRDEVKV 240 KEPGRIGEGN EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH 300 SPELVESVAE SKDGGGGGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV PPGSTKNLDL 360 QNDNSSPPVK LEASVESQPL IDFLDHVKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLEA 420 VRRRVKEGIY SDSNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS 480 SDSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK 540 KRDQNKMPTE DSAGLDSKNP SRRQQPARAE EPRVTKKRSA DRFASASTSL KKNAKNGAGT 600 NSKQMSGTNL EKNKGKGGSS SQQPDPRCEN KNNQSSADLK KRSAANFLNR MKQSSSSNNS 660 TLLDALKGSP LSASNNGRGG SELKKDENSK GSGGSNLKKN EHGKGGSEHK KNENVKWSGK 720 KAQVSTRSSD VKQAKEKTIP ATKSLGRPLN KGAAPPTPSG KRGRGDRESE SAASKQQRKK 780 PRK

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MAGPNGATGD YGNESEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR  60
STSPFLSLSL TPRNCQMKYL DLTRRFLFKH DPRNTDNAYK DDDVEAAGHD GSIISTDESV  120
PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE  180
EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NNKDEQSVNG SVPKDGRVGE IEAGRDEVKV  240
KEPGRIGEGN EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH  300
SPELVESVAE SKDGGGGGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV PPGSTKNLDL  360
QNDNSSPPVK LEASVESQPL IDFLDHVKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLEA  420
VRRRVKEGIY SDSNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS  480
SDSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK  540
KRDQNKMPTE DSAGLDSKNP SRRQQPARAE EPRVTKKRSA DRFASASTSL KKNAKNGAGT  600
NSKQMSGTNL EKNKGKGGSS SQQPDPRCEN KNNQSSADLK KRSAANFLNR MKQSSSSNNS  660
TLLDALKGSP LSASNNGRGG SELKKDENSK GSGGSNLKKN EHGKGGSEHK KNENVKWSGK  720
KAQVSTRSSD VKQAKEKTIP ATKSLGRPLN KGAAPPTPSG KRGRGDRESE SAASKQQRKK  780
PRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-61	MYB_related family protein