PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067958.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 820aa MW: 94217.8 Da PI: 7.4432

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.1	1.9e-25	40	127	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn YA ++GF vrk++ +k + g +t+r+f C+keg+r+++k++ ++++r+raet+tgC a++ + +++ ++k++vt+++ eHnH+l XP_027067958.1 40 KFYNMYAATIGFGVRKEYCNKD-KLGIVTSRKFACNKEGFRRQDKRD-RETKRPRAETKTGCLACVIILLDRdTKKYKVTQFVAEHNHPL 127 6****************998.7788*************999.99**************999989************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence
MGGRPFIHEM GDKEDQLDMT QKGFIPYYGQ LFDSDDKAYK FYNMYAATIG FGVRKEYCNK 60 DKLGIVTSRK FACNKEGFRR QDKRDRETKR PRAETKTGCL ACVIILLDRD TKKYKVTQFV 120 AEHNHPLHIP QCVHLIPSQR RTTITQDNSE LVDAYGLSLK QSNNLVDKLG YLPNKRSRGL 180 RFGEAGTIFR YFQQQLLENP SFYFAVQLDS EEQLTNVFWA DARMTIDYKY FGEVVTFDTT 240 FRKNEEYRPL GIFLGFNHHR QMVIFGAALL YDDSVDSYKW LFQTFLEAMS GKPPRTFFTD 300 QEPAMAKASA SVMPNTFHGL CTHHIRQNFL KHLGHMMRTE TGLVQLFSKC MLEIEDEVAF 360 EETWREMLQK HNLDSNTWLK SIYELREKWA KTYMKTKLTL GMRSKQLSKS FNADLKHHLK 420 TDQDLVEFFT EFHRAVEKRR YKELTAEYGA RQKVPSLKIK YSPMLNQVAE IYTPTIFEEF 480 QDEFDVSLAL VVKGHTVNDN VHEYMLARYD GGDDQRVICE KSTQSVLCSC QKYECEGILC 540 SHAIKVLDLL NIKLVPNDLI EKRWTRDAKK GILKGPNQEN DMEEDVHLKV VGRYRMLCST 600 LVRVAIRAAE CQEATDYLVQ CVDKLTRKVE EICNKQMSIE QASTNHQSSY NATDQEDVLV 660 ISMGVNPSGS KSGQGCKSNK RTGSWTDMFG EKSMYESNNN QVQIADQSQE VSVDHVSSPQ 720 SANNSVSARS CSQSTGDLLH LHQATSYPSQ DSNSNSLIGQ SSVEVVQRAN NGAVLENRNF 780 LMNFNGLGTA MSPTGTQFLM VKQSIFYYHH TYLQSLYLCD

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence

MGGRPFIHEM GDKEDQLDMT QKGFIPYYGQ LFDSDDKAYK FYNMYAATIG FGVRKEYCNK  60
DKLGIVTSRK FACNKEGFRR QDKRDRETKR PRAETKTGCL ACVIILLDRD TKKYKVTQFV  120
AEHNHPLHIP QCVHLIPSQR RTTITQDNSE LVDAYGLSLK QSNNLVDKLG YLPNKRSRGL  180
RFGEAGTIFR YFQQQLLENP SFYFAVQLDS EEQLTNVFWA DARMTIDYKY FGEVVTFDTT  240
FRKNEEYRPL GIFLGFNHHR QMVIFGAALL YDDSVDSYKW LFQTFLEAMS GKPPRTFFTD  300
QEPAMAKASA SVMPNTFHGL CTHHIRQNFL KHLGHMMRTE TGLVQLFSKC MLEIEDEVAF  360
EETWREMLQK HNLDSNTWLK SIYELREKWA KTYMKTKLTL GMRSKQLSKS FNADLKHHLK  420
TDQDLVEFFT EFHRAVEKRR YKELTAEYGA RQKVPSLKIK YSPMLNQVAE IYTPTIFEEF  480
QDEFDVSLAL VVKGHTVNDN VHEYMLARYD GGDDQRVICE KSTQSVLCSC QKYECEGILC  540
SHAIKVLDLL NIKLVPNDLI EKRWTRDAKK GILKGPNQEN DMEEDVHLKV VGRYRMLCST  600
LVRVAIRAAE CQEATDYLVQ CVDKLTRKVE EICNKQMSIE QASTNHQSSY NATDQEDVLV  660
ISMGVNPSGS KSGQGCKSNK RTGSWTDMFG EKSMYESNNN QVQIADQSQE VSVDHVSSPQ  720
SANNSVSARS CSQSTGDLLH LHQATSYPSQ DSNSNSLIGQ SSVEVVQRAN NGAVLENRNF  780
LMNFNGLGTA MSPTGTQFLM VKQSIFYYHH TYLQSLYLCD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein