PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027067930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARR-B | ||||||||
Protein Properties | Length: 694aa MW: 75583.4 Da PI: 6.5619 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.5 | 7e-29 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl XP_027067930.1 208 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 261 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.6e-12 | 210 | 260 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ +g+t++++ s++qky+ XP_027067930.1 210 RVVWSIELHRKFVAAVNQLGIEkaVPKRILDLMNvEGLTRENVASHLQKYR 260 678***********************************************7 PP | |||||||
3 | Response_reg | 81.8 | 2.3e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ll +l+k +y +v++++++++al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++++++ + + G XP_027067930.1 26 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARAALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGVTHG 118 799********************.***************888889*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ +eel++ XP_027067930.1 119 ACDYLVKPVRIEELRN 134 **************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence |
MTVEELRGNS EGGDRNYDNF PVGMRVLAVD DDPICLKLLD GLLRKCQYHV TTTSQARAAL 60 KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDPKL VMKGVTHGAC 120 DYLVKPVRIE ELRNIWQHVI RRKKFDTNKQ GKSTYEDKAL QGHGDVCQGH QNTGTTDQNG 180 KLNKKRKDEE DESEDTGNDH EDPATQKKPR VVWSIELHRK FVAAVNQLGI EKAVPKRILD 240 LMNVEGLTRE NVASHLQKYR LYLKRISSVA TQQANMVAAL GGKDAAYMRM STLDGFGDFR 300 TLSGSGRLSN PAFASYTQGG MLGRLNSPAG INLRNLASPT VVHPSHAQTL NNSTGTLGKL 360 HPAVSPASQT ASVFQGVPSS LELDQLQQNK SAMHIGDFNP MDDSRIFGAP SAFTDARALA 420 INSNSNLTGV PNNSLMLQGN SQQILAGGGF VDQSSFPSEL FNRDVGVSSK FVDHGRTNEN 480 WQSAVQLSKF PSNALAPNDS FSQGQLPLSS VRDNNSSAGP HQQNSPLGFS STATTAAPLE 540 DSRGEIQCQE GLVSGSVQNL SQASAQRWGV SKQSYSHNSN NSFSTLNPQA SPPLSQSMGQ 600 TGITDRRMDM CLTGQSGVGI SSFLQHSQVE NPTTGSRTRS GEDYMLEQIR PQGGFVPNSY 660 DSLDDLMSAI KREPNGSMFD GDMGFDAYQF GSCI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-135 | ARR-B family protein |