PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067685.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family RAV
Protein Properties Length: 324aa    MW: 36943.8 Da    PI: 7.4972
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59.1e-105299155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGV   + +g W A+I+       + r++lg+f ++ +Aa a++ a+ kl+g
  XP_027067685.1 52 TRFKGVVAQR-NGHWGAQIYA------HDRIWLGTFKSEIDAAMAYDSAAIKLRG 99
                    5799**7555.8*******99......7**********99*************98 PP
2B383.91.5e-26168265185
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f k+ltpsdv+k++rlv+pkk+a  +                   e + +l++ d+s rsW+++++y+k+s+++v+t+GW++Fv+++gL+++D v
  XP_027067685.1 168 FHKELTPSDVGKLNRLVIPKKYALMYfprlncdvqetdrdiA--GEDDAELVFFDRSMRSWKFRYCYWKSSQSFVFTRGWNKFVRDKGLRAKDLV 260
                     89******************************9998888542..346789********************************************* PP

                     EEEE- CS
              B3  81 vFkld 85 
                     +F+l 
  XP_027067685.1 261 IFSLC 265
                     **975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MAIIEVASFT MQEESEICGT ATNSIQEIFD SNSSSHLIQN KRQKQDTDVA STRFKGVVAQ  60
RNGHWGAQIY AHDRIWLGTF KSEIDAAMAY DSAAIKLRGG DSYRNFPWTS ITKEEPKFQS  120
QFSTQAVLNM IKDGSYPSKF VDYLRAQSFV QSFATVPSNE GFLCKKLFHK ELTPSDVGKL  180
NRLVIPKKYA LMYFPRLNCD VQETDRDIAG EDDAELVFFD RSMRSWKFRY CYWKSSQSFV  240
FTRGWNKFVR DKGLRAKDLV IFSLCEFKDG SDELQSVLMI DGGYHESFHG ALMTNSSKGE  300
NNLPEMEQNG SVNRGLKLFG VQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.16e-94RAV family protein