PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067490.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 417aa MW: 47520.7 Da PI: 8.3217

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	27	1.1e-08	43	80	2	39
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefakk 39 Fl+k+++++ed e++++isw+++g+s++vld+ +fa + XP_027067490.1 43 FLTKTFQMVEDTETNNMISWNSEGTSLIVLDHLKFAAE 80 9********************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MEVHGGGIAR NGGIVRPSSL PSKQASEKME FMKGVRGFTP PPFLTKTFQM VEDTETNNMI 60 SWNSEGTSLI VLDHLKFAAE GFRKIGLRQY EYENKWFQRG QEHLLMNIRR RNDEDPAIKK 120 RRGLRKQHVT AARPSMEAEL EIFEDHINAL KEDITRSKYH LGKLESSIAT FKKNVKRMKA 180 KSKALIKVFT RIFSPALVEK IIQRVEEEPE LEILQTMKRR RVILPQSSKT TTKSMDDGAC 240 GMDQDDQEAN TSMAESKKSA DQKLWKKFMG DDSVSEDESE QQLLKQHWRI DMGFDDLMVS 300 KIVNAKEPNL DVEDEVAVDL WTVSLGAVSR RGEKAAARRV DAAEFSASFG YFYLQGVHLI 360 FVDWGIPVST CFRLVTGRED CALGQCLNTK LLMVFMMSAI TMFDNPPVLI IHSVLQF

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MEVHGGGIAR NGGIVRPSSL PSKQASEKME FMKGVRGFTP PPFLTKTFQM VEDTETNNMI  60
SWNSEGTSLI VLDHLKFAAE GFRKIGLRQY EYENKWFQRG QEHLLMNIRR RNDEDPAIKK  120
RRGLRKQHVT AARPSMEAEL EIFEDHINAL KEDITRSKYH LGKLESSIAT FKKNVKRMKA  180
KSKALIKVFT RIFSPALVEK IIQRVEEEPE LEILQTMKRR RVILPQSSKT TTKSMDDGAC  240
GMDQDDQEAN TSMAESKKSA DQKLWKKFMG DDSVSEDESE QQLLKQHWRI DMGFDDLMVS  300
KIVNAKEPNL DVEDEVAVDL WTVSLGAVSR RGEKAAARRV DAAEFSASFG YFYLQGVHLI  360
FVDWGIPVST CFRLVTGRED CALGQCLNTK LLMVFMMSAI TMFDNPPVLI IHSVLQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	222	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-20	HSF family protein