PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067279.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 473aa MW: 55377.4 Da PI: 9.5002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.7	4.5e-19	55	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY ++k+vGF +r + +kk r+g +t +++vC++eg+r+++ + +++++ + tr+gC a++ v+ +k +k+ +++++ +HnH+la XP_027067279.1 55 EFYLCHSKMVGFGIRERDEKKD-RKGIVTYKRWVCNREGFRNSKWLNlVNRKKEAKRLTRVGCLATIIVQWNKdIQKFTIKRFNMDHNHQLA 145 69************999887.7788************99886788888999*********99989*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEEMTAHVDE LEQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQVLTFDSI EDAREFYLCH 60 SKMVGFGIRE RDEKKDRKGI VTYKRWVCNR EGFRNSKWLN LVNRKKEAKR LTRVGCLATI 120 IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHAILM HGVGIRIPQI 180 VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDASQ VLAYLDGRAN GEPKFFYKYV 240 VDVEKRLIRL FWTDSQSRLD YQCFGDVLVF DSTYRTNAYR KPLVILAGVN HHYVTKIFGC 300 ALIADETEDT YKWVLETFLE AMEKKAPISV VTDGDGAMRN AIKAVIPSAR HRLCAWHLKR 360 NVVTHTNKGF VLDFDVAMDM ICSHEEFERR WHLLVEKHNL RDNQWVVDLY NKREKWAAAF 420 LRGHFFAGMK STQRSEQLNA TAHKYLQFKM LLYPFAHRFE LFLSKVRRNE HKE

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEEMTAHVDE LEQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQVLTFDSI EDAREFYLCH  60
SKMVGFGIRE RDEKKDRKGI VTYKRWVCNR EGFRNSKWLN LVNRKKEAKR LTRVGCLATI  120
IVQWNKDIQK FTIKRFNMDH NHQLANQEFV QFLRSHRSVN PADLEHAILM HGVGIRIPQI  180
VDLQAYQAGG HNKMGYTEKD LRNAVDQFHR NALEVGDASQ VLAYLDGRAN GEPKFFYKYV  240
VDVEKRLIRL FWTDSQSRLD YQCFGDVLVF DSTYRTNAYR KPLVILAGVN HHYVTKIFGC  300
ALIADETEDT YKWVLETFLE AMEKKAPISV VTDGDGAMRN AIKAVIPSAR HRLCAWHLKR  360
NVVTHTNKGF VLDFDVAMDM ICSHEEFERR WHLLVEKHNL RDNQWVVDLY NKREKWAAAF  420
LRGHFFAGMK STQRSEQLNA TAHKYLQFKM LLYPFAHRFE LFLSKVRRNE HKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	109	KKDRKGIVTYKRWVCNREGFRNSKWLNLVNRKKEAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-80	FAR1 family protein