PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067092.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 610aa    MW: 68910.5 Da    PI: 7.0215
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-15129190268
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                     W+++evlaL+++r++me+++ +       We+vs+k+ e g++rs+++Ckek+e+ ++ +  ++ ++
  XP_027067092.1 129 WSNDEVLALLRIRSSMENWFPEI-----TWEHVSRKLTELGYHRSAEKCKEKFEEESRHFNSMNYNK 190
                     ********************998.....9****************************9998877554 PP
2trihelix93.32.4e-29496585186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi+++ ++ +++ ++      +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  XP_027067092.1 496 RWPRDEVQALINLKCRLTNNSTSDDsikegAKGPLWERISQGMLELGYKRSSKRCKEKWENINKYFRKTKDNNKKR-SLDSRTCPYFHQLS 585
                     8*************99888888653344559********************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    
MFDGVPADQF HQFLAASSRT SLPIPLSFPL HHHGVSIPSS AASVSLASPP LPPTSATPPA  60
PAFLGCFDPY SSPLTLDVQV QPHHHHHHHQ QSGLHHQLHH QSPPPTSKNG EEKEEREGSI  120
SAAIPLDPWS NDEVLALLRI RSSMENWFPE ITWEHVSRKL TELGYHRSAE KCKEKFEEES  180
RHFNSMNYNK NYRFFSDLDE LYNDENPQVS TEKSQDLVKE KDKPEGDNKM DASTLQEEED  240
TGNTVAVANP SDQENAELVK ESTKSRKRKR NHKFEMFKGF CEAVVKKIVE QQEVLHNKLI  300
EDMVRRDRES IARDEAWKCQ EMDRINKEIE MRAQEQAIAC DRQGKIIDLL KKFTSGSEAD  360
QSLVRRIEDL LKVTNSSNSV TSSSEILPPS SLNSDQTKLE GVTSTSMAIS HHNPTLVLSR  420
NNPTSSGETT PSPHNHCSTP QATSSATLPT TSQNPNTNSY KYHEDPSQSN PSLAQKSSQK  480
MVSAPNERGE RIAGKRWPRD EVQALINLKC RLTNNSTSDD SIKEGAKGPL WERISQGMLE  540
LGYKRSSKRC KEKWENINKY FRKTKDNNKK RSLDSRTCPY FHQLSTLYGQ GTLVAPSNLP  600
ENRQTSPENH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-87Trihelix family protein