PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066736.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 381aa    MW: 42742.7 Da    PI: 8.8011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-15107152147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_027066736.1 107 RGHWRPYEDAKLKELVCQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 152
                      899*****************************.***********996 PP

2Myb_DNA-binding55.51.3e-17159202146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+e+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_027066736.1 159 KMAFSEEEEERLLAAHSMYGNK-WAMIARLFP-GRTDNAVKNHWHV 202
                      679*******************.*********.***********85 PP

Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MNFQHKGDGD SLQYGFQGVN SSSPPIPKVP IPMDFPWEGE SDLNIRRGMI QYLIAGPSEQ  60
QVKMPWCFHL VGDHGREARR EDDGRVDQET QESKKKNGGG HTKLCSRGHW RPYEDAKLKE  120
LVCQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKM AFSEEEEERL LAAHSMYGNK  180
WAMIARLFPG RTDNAVKNHW HVIIARKQRE ENSVYRRRKP SSFQAYHKGF TVNTLQNSAC  240
NGSGVSTNNR EESASTCTDL SLTPSSNRVS PGYFTSSVSA EKYHSFGPDL NQAASSGDER  300
KVMKTRSAVQ YCQLNNNEPI AKATVTINPS AQSDSSSELS ASESVANNAS TRLLLLNDKI  360
ENGSESYKLP FIDFLGVGAR K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-68MYB family protein