PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066582.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 399aa MW: 44129 Da PI: 8.8561

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.5	4.5e-23	35	100	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027066582.1 35 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 100 79***************999********.....****************************98 PP
2	E2F_TDP	72.6	4.2e-23	171	251	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027066582.1 171 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 251 79*******************************9998899*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGMELLPSTN QASEAAAAAA AAGGSGGGSQ HIYCRKQKSL GLLCSNFLRL YDREGVETIG 60 LDDAAARLGV ERRRIYDIVN VLESVGVLAR KAKNRYTWKG FGAIPSALQL LKEEGMMTNE 120 NANDGTSSVK TSDDEEDDTY SNLSNYSSQN HNFNPISAPK LPQSSKYADN RKEKSLALLT 180 QNFVKLFLCM DMDMISLDDA AKILLKNGKD PAMTRSKVRR LYDIANVLAS MKFIEKTHHP 240 ETRKPAFRWL GMKGISESGA DPSAIDGSKK RAFGMDLTNR TVRRSKVELV GDGGLQQGMK 300 VQLKAQVKRE ALEDEVLRPK LQIDSRASTK SYRFGPFAPV NAPHVAASEE NKETQSHDWE 360 SLAATYRPQY HNQGIMLDHT ISFERSFCTL CGSLEILVH

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGMELLPSTN QASEAAAAAA AAGGSGGGSQ HIYCRKQKSL GLLCSNFLRL YDREGVETIG  60
LDDAAARLGV ERRRIYDIVN VLESVGVLAR KAKNRYTWKG FGAIPSALQL LKEEGMMTNE  120
NANDGTSSVK TSDDEEDDTY SNLSNYSSQN HNFNPISAPK LPQSSKYADN RKEKSLALLT  180
QNFVKLFLCM DMDMISLDDA AKILLKNGKD PAMTRSKVRR LYDIANVLAS MKFIEKTHHP  240
ETRKPAFRWL GMKGISESGA DPSAIDGSKK RAFGMDLTNR TVRRSKVELV GDGGLQQGMK  300
VQLKAQVKRE ALEDEVLRPK LQIDSRASTK SYRFGPFAPV NAPHVAASEE NKETQSHDWE  360
SLAATYRPQY HNQGIMLDHT ISFERSFCTL CGSLEILVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-101	E2F/DP family protein