PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027066581.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 402aa MW: 44657.5 Da PI: 9.1155 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.5 | 4.6e-23 | 35 | 100 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027066581.1 35 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 100 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 72.6 | 4.2e-23 | 171 | 251 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027066581.1 171 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 251 79*********************************99****98899*********************99999*******87 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence |
MGMELLPSTN QASEAAAAAA AAGGSGGGSQ HIYCRKQKSL GLLCSNFLRL YDREGVETIG 60 LDDAAARLGV ERRRIYDIVN VLESVGVLAR KAKNRYTWKG FGAIPSALQL LKEEGMMTNE 120 NANDGTSSVK TSDDEEDDTY SNLSNYSSQN HNFNPISAPK LPQSSKYADN RKEKSLALLT 180 QNFVKLFLCM DMDMISLDDA AKILLKNGKD PAMTRSKVRR LYDIANVLAS MKFIEKTHHP 240 ETRKPAFRWL GMKGISESGA DPSAIDGSKK RAFGMDLTNR TVRRSKVELV GDGGLQQGMK 300 VQLKAQVKRE ALEDEVLRPK LQIDSRASTK SYRFGPFAPV NAPHVAASEE NKETQSHDWE 360 SLAATYRPQY HNQALRDLFA HYVEAWKSWY TEVAENPIQL IS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-114 | E2F/DP family protein |