PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066406.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 338aa    MW: 37021.3 Da    PI: 5.7908
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35121032102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d++ + li w + +nsf+v+d+ +f++k+Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         w F++++F +g+++ll++
  XP_027066406.1  12 FVMKTYQMVNDPSSDGLIAWGKANNSFIVIDPLDFSQKILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WAFANEWFLRGQTHLLKN 97 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  XP_027066406.1  98 ISRRKH 103
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MEAANNNIIA PFVMKTYQMV NDPSSDGLIA WGKANNSFIV IDPLDFSQKI LPAYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW AFANEWFLRG QTHLLKNISR RKHCSRNSSN SRAEDDEDDE  120
GIIMELARLK QEQKELDLQL SRMNKRLEAT ERRPQQMMAF LSKVAQDPEI LPRMMLEKER  180
TKRLNIASGD KKRSIMMISS TSPSASVSSP PSSSGMPLTS SSVKSEEEED DANLDVDNYC  240
HFSSSPETPS SAWFSQRPVL GRSVIAQESS NSGGNISSSL SSGSSAGSSG STVAPPLDGV  300
PASDATFGGD ISYVGRAAVG EAVSPQPPYP FSLLGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-82HSF family protein