PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066128.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 488aa    MW: 56423.9 Da    PI: 4.484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-171596188
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                    ffk+++p  ++++ r+ +p  f+ ++ +gk   s    l+d+ g++W v++   + ++ +++ +GW eFv++n ++ gDf+vF++dg+s
  XP_027066128.1 15 FFKIFIP--NSSKERMKIPSAFT-SYmKGK--LSPRAYLRDRFGNKWPVRV--GRIGDDFFFLDGWAEFVEENSVELGDFLVFQYDGHS 96
                    8999955..5566679******9.662444..5559***************..99999999999*********************9853 PP
2B335.32e-11396477993
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + +++ l++p + +++h++k   +++++l d++gr+W+ + +++k + r++  +GW++ ++ n +   D+++ +++++ ++ l+
  XP_027066128.1 396 RARRQDALYVPHDILRDHNLK--LPQEIILVDQQGREWTSTRNHWKDG-RFWYHGGWSSLCRVNIVGFDDICICEFKRKVGGGLY 477
                     5567789***********999..7889***************999996.788899******************998876444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MESSRMHDNQ RLRAFFKIFI PNSSKERMKI PSAFTSYMKG KLSPRAYLRD RFGNKWPVRV  60
GRIGDDFFFL DGWAEFVEEN SVELGDFLVF QYDGHSLYDV KLLGHSACEK KGVGALKVLK  120
HEEEEQMEEV CEVKEVEGEE EEEADEGNEV KKEEQEEDNR EKEEEEGEEE THEDKQEEME  180
ESYSNATEID TDQDYIMEEE EDFTEEAEEE EKDMEEEQPS KADITATPGT SKSTYKGLRK  240
IKGGKQGNNS LEVNGAETEG EKEQDADEIE QKKEGAGEIN EDKQEKEVGK CYSNTIETEA  300
NSDYMMEAED DSTQKEEEEG NVEEEPAAKT HSKVATVDSK SSSKGRKKIR GGKHESKAVN  360
GHKRRRRWLI DPYGYDLFKS GCISQPKNPY FVTQKRARRQ DALYVPHDIL RDHNLKLPQE  420
IILVDQQGRE WTSTRNHWKD GRFWYHGGWS SLCRVNIVGF DDICICEFKR KVGGGLYIEV  480
QILRQQDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346367RKKIRGGKHESKAVNGHKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-18B3 family protein