PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027065851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 43619.4 Da PI: 6.0656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 59 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + XP_027065851.1 59 KGPWSQEEDAILGRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ XP_027065851.1 111 RKPFTDEEDSIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 155 789*******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MQVVTANDGS ANVITSEKRG SDDGEDGVVL IADGSGSGGA GGSSRSSQAN SKKSLDRVKG 60 PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RKPFTDEEDS 120 IILQAHAIHG NKWASIARLL PGRTDNAIKN HWNSTLRRRC MESDKFKFDS SQVMEDASAE 180 KSKASSNETL SCGDVNSSKS LDGKDVSSKE KMDDEQHEIS TQTDYQCSSE AGDPPSLFRP 240 VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSDS GMSKLFQAAY GDQLIPHQCG 300 HCCFASSGTA ESRTSFLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA 360 ANSVMSSRSH LQIRAPEGSR MYDSLEDRKC RLMGMMTEPV TSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 2e-90 | MYB family protein |