PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065744.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 175aa    MW: 18975.2 Da    PI: 5.9902
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.21.2e-5829126198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y++plkvyl++yre+eg
  XP_027065744.1  29 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKVYLTRYREMEG 123
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_027065744.1 124 DTK 126
                     975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MADSSQGGTP ASPGGGSHES GDQSPRSGVR EQDRFLPIAN ISRIMKKALP ANGKIAKDAK  60
ETVQECVSEF ISFITSEASD KCQREKRKTI NGDDLLWAMA TLGFEEYIDP LKVYLTRYRE  120
MEGDTKGSAK GADGSAKRDG VQLGPSPQGS FSQGMNYGSS QWRGQNVMIQ MQGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-84NF-YB family protein