PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065135.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 451aa    MW: 50608 Da    PI: 6.9433
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.6e-130814501373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ecA+a+ +++le+ ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y++l+++e +    ++ l+++++++e++P+lkf++
  XP_027065135.1  81 LKQLLMECARAFYENELENFEKLVETARGAVSITGEPIQRLGAYMLEGLIARKEASGTNIYRTLRCKEPE---GKDLLSYMHILYEICPYLKFGY 172
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + e l ++g+rLa + e++++p+ef++ v     +
  XP_027065135.1 173 MAANGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGEGLAAVGKRLAAISEKFNIPVEFHA-VPVFAPE 266
                     *******************************************************999999**************************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L ++pgEalaVn+ lqlh+++desv+++++rd +L++vk l+Pkvv++veqe+++n+++Fl rf e+leyysa+f+s+++++pr+ +eri
  XP_027065135.1 267 VTRDMLCIRPGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKALNPKVVTLVEQESKTNTAPFLPRFWETLEYYSAIFESIDVTMPRDRKERI 361
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+L+s+SaW
  XP_027065135.1 362 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEADGAMLLGWKDRNLISASAW 450
                     **********************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MGPDEEATTS APSVGENKGP QASGQKSRAL SQENQPLGSQ IIHSQPSYAL HLRKSGNELP  60
MEKRLRAIEE LSLKGIPPTN LKQLLMECAR AFYENELENF EKLVETARGA VSITGEPIQR  120
LGAYMLEGLI ARKEASGTNI YRTLRCKEPE GKDLLSYMHI LYEICPYLKF GYMAANGAIA  180
EACRNEDRIH IVDFQIAQGT QWMTLLQALA ARPSGAPHVR ITGIDDPVSQ YARGEGLAAV  240
GKRLAAISEK FNIPVEFHAV PVFAPEVTRD MLCIRPGEAL AVNFPLQLHH TPDESVDVTN  300
PRDGLLRMVK ALNPKVVTLV EQESKTNTAP FLPRFWETLE YYSAIFESID VTMPRDRKER  360
INVEQHCLAR DIVNIIACEG KERVERHELF GKWKSRFTMA GFRQYPLSSY VNSVIRGLLR  420
CYSEHYTLVE ADGAMLLGWK DRNLISASAW H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-178GRAS family protein