PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064604.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 461aa MW: 51974.6 Da PI: 7.9757

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	402	456	2	47
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 ++WT E+e l+++v+++ ++ W++I + Rt+ ++k++w++ XP_027064604.1 402 LPWTDAEEEMLKEGVEKFSTDrnkniPWRKILEFGRhvfdGSRTPVDLKDKWRNI 456 69****************************998899*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MGWSEKDFCI KCDEGGNVLI CRDSRCPIVV HEKCLGFPAK FDEMGRFYCP YCVYRRAIEE 60 AHQAREKALS KKKALSKFLD TKMTNGDWQT QKTEISKRKE LSQLPGVDST GSLNSGCRPD 120 KINVHNHTAR LVEDQNEGRF APECSRLVLL SKETGESIRG DQNDVLCSNT GDIGGSSDCN 180 CRIVVVGHRT ESGPIVASGN ECVSSDREET IKRFEMVEIG NKVQLHSQWQ QDDLRGKVVE 240 DQLDDKNLRE SPAVENRGME NHLSPEAKRV GKDGDMLREY DGRLAGEEVE KEKVLESPAI 300 SPSHSALEMH LQEKRAGQTS DSICKDSNAA STGKASKQND KRKEENAEAT CFRKLSRNSA 360 SHHRASLDQF EKIHACGKLR KLNKPAPQCS MILCPNARRK SLPWTDAEEE MLKEGVEKFS 420 TDRNKNIPWR KILEFGRHVF DGSRTPVDLK DKWRNILGKV R

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MGWSEKDFCI KCDEGGNVLI CRDSRCPIVV HEKCLGFPAK FDEMGRFYCP YCVYRRAIEE  60
AHQAREKALS KKKALSKFLD TKMTNGDWQT QKTEISKRKE LSQLPGVDST GSLNSGCRPD  120
KINVHNHTAR LVEDQNEGRF APECSRLVLL SKETGESIRG DQNDVLCSNT GDIGGSSDCN  180
CRIVVVGHRT ESGPIVASGN ECVSSDREET IKRFEMVEIG NKVQLHSQWQ QDDLRGKVVE  240
DQLDDKNLRE SPAVENRGME NHLSPEAKRV GKDGDMLREY DGRLAGEEVE KEKVLESPAI  300
SPSHSALEMH LQEKRAGQTS DSICKDSNAA STGKASKQND KRKEENAEAT CFRKLSRNSA  360
SHHRASLDQF EKIHACGKLR KLNKPAPQCS MILCPNARRK SLPWTDAEEE MLKEGVEKFS  420
TDRNKNIPWR KILEFGRHVF DGSRTPVDLK DKWRNILGKV R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	7e-06	MYB_related family protein